Publications

Submitted & Preprints

Quirk LE, Sunda WG, *Cohen NR Iron physiology and metabolism of model phytoplankton taxa in the South Atlantic Bight.

Ryu Y, Maloney AE, Luu VH, Guo L, Oleynik S, Fawcett SE, Higgins MB, Oostendel NV, Ward BB, Cook CCZ, Cohen NR, Ewton E, Menden-Deuer S, Granger J, Marchetti A,Aardema HM, Slagter HA, Schiebel R, Martínez-García A, Haug GH, Sigman DM. Preferential representation of prokaryote-sourced organic matter in surface ocean particles.

Prisca L, Seim H, Torano O, Neave E, Jang S, Johnson Z, Haines S, Gifford S, Cohen N, Moreno CM, Lankford M, Palacios CV, Marchetti A. Drivers of marine phytoplankton diversity and connectivity in the Galápagos Archipelago spanning an ENSO cycle.

Brisbin, M.M., McIlvin, M.R., Wilburn, D.B., Saunders, J., Cohen, N.R., Bhatia, M., Kujawinski, E., Searle, B.C., Saito, M.A. Exploration of Artificial Intelligence-Based Spectral Libraries for Data Independent Acquisition in Complex Ocean Metaproteomic Analyses. Preprint: https://www.authorea.com/doi/full/10.22541/au.173218889.93373224

2024

Krinos AI, Brisbin MM, Hu SK, Cohen NR, Rynearson TA, Follows MJ, Schulz F, Alexander H. Missing microbial eukaryotes and misleading meta-omic conclusions. Nature Communications https://www.nature.com/articles/s41467-024-52212-w

*Cohen NR, Krinos AI, Kell RM, Chmiel RJ, Moran DM, McIlvin MR, Lopez PZ, Barth A, Stone J, Alanis BA, Chan EW, Breier JA, Jakuba MV, Johnson R, Alexander H, *Saito MA. Microeukaryote metabolism across the western North Atlantic Ocean revealed through autonomous underwater profiling. Nature Communications https://www.nature.com/articles/s41467-024-51583-4

Zafiriou O, Huixiang X, Kieber D,Wang W, Song G, Cohen NR. Cyanohydrin Equilibria Implicate Non-Aromatic Aldehydes in Photochemical Production of Oceanic Carbon Monoxide. Environmental Science & Technology https://pubs.acs.org/doi/abs/10.1021/acs.est.4c04637

Millette N, Leles S, Johnson MD, Maloney AE, Brownlee EF, Cohen N, Duhamel S, Poulton NP, Princiotta SD, Stamieszkin K, Wilken S, and Moeller HV Recommendations for Advancing Mixoplankton Research through Empirical-Model Integration. Frontiers in Marine Science https://www.frontiersin.org/articles/10.3389/fmars.2024.1392673/full

Moreno CM, Bernish M, Meyer MG, Li Z, Waite N, Cohen NR, Schofield O, Marchetti A. Molecular physiology of Antarctic diatom natural assemblages reveals multiple strategies contributing to their ecological success (2024) mSystems https://journals.asm.org/doi/10.1128/msystems.01306-23

2023

Millette N, Gast R, Luo J, Moeller H, Stamieszkin K, Anderson K, Brownlee E, Cohen N, Duhamel S, Dutkiewicz S, Gilbert P, Johnson M, Leles S, Maloney A, McManus G, Poulton N, Princiotta S, Sanders R, Wilken S. Mixotrophs and Mixotrophy: Future research priorities. (2023). Journal of Plankton Research https://academic.oup.com/plankt/article/45/4/576/7192955

Krinos AI, Cohen NR, Follows MH, Alexander H. Reverse engineering environmental metatranscriptomes clarifies best practices for eukaryotic assembly. (2023) BMC Bioinformatics https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-022-05121-y

2022

Maniscalco MA, Brzezinski MA, Lampe RH, Cohen NR, McNair HM, Ellis KA, Brown M, Till CP, Twining BS, Bruland KW, Marchetti A, Thamatrakoln K. Diminished carbon and nitrogen assimilation drive changes in diatom elemental stoichiometry independent of silicification in an iron-limited assemblage (2022) ISME Communications https://www.nature.com/articles/s43705-022-00136-1

*Cohen NR, *Alexander H, *Krinos AI, Hu SK, Lampe RH. Marine microeukaryote metatranscriptomics: sample processing and bioinformatic workflow recommendations for ecological applications (2022) Frontiers in Marine Science https://www.frontiersin.org/articles/10.3389/fmars.2022.867007/full

Kellogg RM, Moosburner M, Cohen NR, Hawco NJ, McIlvin MR, Moran DM, DiTullio GR, Subhaus AV, Allen AE, Saito MA. Adaptive responses of marine diatoms to zinc scarcity and ecological implications. (2022) Nature Communications https://www.nature.com/articles/s41467-022-29603-y

Cohen NR. Mixotrophic plankton foraging behavior linked to carbon export (2022) Nature Communications https://www.nature.com/articles/s41467-022-28868-7 Invited News & Views highlight for Larsson et al. 2022

2021

*Cohen NR, Noble AE, Moran DM, McIlvin MR, Goeptfert TJ, Hawco NJ, German CR, Horner TJ, Lamborg CH, McCrow JP, Allen AE, *Saito MA. Hydrothermal trace metal release and microbial metabolism in the Northeast Lau Basin of the south Pacific Ocean. Biogeosciences https://bg.copernicus.org/articles/18/5397/2021/bg-18-5397-2021.html

Held NA, Sutherland KM, Webb EA, McIlvin MR, Cohen NR, Devaux AJ, Hutchins DA, Waterbury J, Hansel CM, Saito MA. Mechanisms and heterogeneity of in situ mineral processing by the marine nitrogen fixer Trichodesmium revealed by single-colony metaproteomics (2021) ISME Communications https://www.nature.com/articles/s43705-021-00034-y

Kranzler CF, Brzezinksi MA, Cohen NR, Lampe RH, Maniscalco M, Till CP, Mack J, Latham JR, Bruland KW, Twining BS, Marchetti A, Thamatrakoln K.Impaired viral infection and reduced mortality of diatoms in iron-limited oceanic regions (2021) Nature Geoscience https://www.nature.com/articles/s41561-021-00711-6

Krinos AI, Hu SK, Cohen NR, Alexander H. EUKulele: Taxonomic annotation of the unsung eukaryotic microbes (2021) Journal of Open Source Software https://joss.theoj.org/papers/10.21105/joss.02817

*Cohen NR, McIlvin MR, Moran DM, Hawco NJ, Held NA, Saunders JK, Brosnahan M, DiTullio G, Lamborg C, McCrow J, Dupont C, *Allen A, *Saito MA. Dinoflagellates alter their carbon and nutrient metabolic strategies across environmental gradients in the central Pacific Ocean (2021) Nature Microbiology https://www.nature.com/articles/s41564-020-00814-7

2020

Twining BS, Antipova O, Chappell PD, Cohen NR, Jacquot JE, Mann EL, Marchetti A, Ohnemus DC, Rauschenberg S, Tagliabue A. Taxonomic and nutrient controls on phytoplankton iron quotas in the ocean (2020) Limnology & Oceanography Letters https://aslopubs.onlinelibrary.wiley.com/doi/full/10.1002/lol2.10179

Held NA, Webb EA, McIlvin MR, Hutchins DA, Cohen NR, Moran DM, Kunde K, Loham MC, Mahaddey C, Woodward M, Saito MA. Co-occurrence of Fe and P stress in natural populations of the marine diazotroph Trichodesmium (2020) Biogeosciences www.bg.copernicus.org/articles/17/ 2537/2020/

Moreno C, Gong W, Cohen NR, DeLong K, Marchetti A. Interactive effects of iron and light limitation on the molecular physiology of the Southern Ocean diatom Fragilariopsis kerguelensis (2020) Limnology & Oceanography aslopubs.onlinelibrary.wiley.com/doi/abs/10.1002/lno.11404

2019

Gorsky G, Bourdin G, Lombard F, Luiza Pedrotti M, Audrain S, Bin N, Boss E, Bowler C, Cassar N, Caudan L, Chabot G, Cohen NR, Cron D, de Vargas C, Dolan J, Douville E, Elineau A, Flores M, Jean-Francois G, Ha¨entjens N, Hertau M, John S, Kelly R, Koren I, Lin Y, Marie D, Moulin C, Moucherie Y, Pesant S, Picheral M, Poulain J, Pujo-Pay M, Reverdin G, Romac S, Sullivan MB, Trainic M, Tressol M, Troubl´e R, Vardi A, Voolstra C, Wincker P, Agostini S, Banaigs B, Boissin E, Forcioli D, Furla P, Galand PE, Gilson E, Reynaud S, Sunagawa S, Thomas OP, Lisette Vega Thurber R, Zoccola D, Planes S, Allemand D, Karsenti E. Expanding Tara Oceans protocols for underway, ecosystemic sampling of the ocean-atmosphere interface during Tara Pacific expedition (2016-18). (2019) Frontiers in Marine Science www.frontiersin.org/articles/10.3389/fmars.2019.00750/full

2018

Lampe RH, Mann E, Cohen NR, Till CP, Thamatrakoln K, Brzezinksi MA, Bruland KW, Twining BS, Marchetti A. Different iron storage strategies among bloom-forming diatoms (2018) Proceedings of the National Academy of Sciences USA www.pnas.org/content/115/52/E12275

Till CP, Solomon JR, Cohen NR, Lampe RH, Marchetti A, Coale TH, Bruland KW. The Iron Limitation Mosaic in the California Current System: factors governing Fe availability in the shelf/nearshelf region (2018) Limnology & Oceanography https://aslopubs.onlinelibrary.wiley.com/doi/full/10.1002/lno.11022

Cohen NR, Gong W, Moran DM, McIlvin MR, Saito MA, Marchetti A. Transcriptomic and proteomic responses of the oceanic diatom Pseudo-nitzschia granii to iron limitation. (2018) Environmental Microbiology www.sfamjournals.onlinelibrary.wiley.com/doi/10.1111/1462-2920.14386

Lampe RH, Cohen NR, Ellis KA, Bruland KW, Maldonado MT, Peterson TD, Parker CE, Bargu S, Brzezinski MA, Kuzminov FI, Thamatrakoln K, Twining BS, Marchetti A. Divergent gene expression among phytoplankton taxa in response to upwelling. (2018) Environmental Microbiology www.sfamjournals.onlinelibrary.wiley.com/doi/abs/10.1111/1462-2920.14361

Cohen NR, Mann, E, Stemple B, Raushenberg S, Jacquot J, Moreno C, Sunda W.G, Twining B.S, Marchetti A. Iron storage capacities and associated ferritin gene expression among marine diatoms. (2018) Limnology & Oceanography aslopubs.onlinelibrary.wiley.com/doi/abs/10.1002/ lno.10800

2017

Cohen NR, Ellis KA, Lampe RH, McNair H, Twining BS, Maldonado MT, Brzezinksi MA, Kuzminov FI, Thamatrakoln K, Till CP, Bruland KW, Sunda WG, Bargu S, Marchetti A. Diatom transcriptional and physiological responses to changes in iron bioavailability across ocean provinces (2017) Frontiers in Marine Science www.frontiersin.org/articles/10.3389/fmars.2017.00360/full

Cohen NR, Ellis KA, Burns W, Lampe RH, Schuback N, Johnson Z, Sa˜nudo-Wilhelmy S, Marchetti A. Iron and vitamin interactions in marine diatom isolates and natural assemblages of the Northeast Pacific Ocean (2017) Limnology & Oceanography aslopubs.onlinelibrary.wiley.com/doi/abs/10. 1002/lno.10552

Marchetti A, Moreno C, Cohen NR, DeLong K, Twining BS, Armbrust EV, Lampe RH. Development of a molecular-based iron-limitation index for bloom-forming pennate diatoms (2017) Journal of Phycology www.onlinelibrary.wiley.com/doi/abs/10.1111/jpy.12539

Ellis KA, Cohen NR, Moreno CM, Marchetti A. Cobalamin-independent Methionine synthase distribution and Influence on Vitamin B12 Growth Requirements in Marine Diatoms (2017) Protist www.sciencedirect.com/science/article/abs/pii/S1434461016300682

Before 2017

Yong C, Patel V, Bang S, Cohen N, Millar J, Kim SK. Maturation and Activity of Sterol Regulatory Element Binding Protein 1 is Inhibited by Acyl-CoA Binding Domain Containing 3 (2012) PLoS ONE www.journals.plos.org/plosone/article?id=10.1371/journal.pone.0049906